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Journal of Biomedical Optics

SPIE-Intl Soc Optical Eng

Preprints posted in the last 30 days, ranked by how well they match Journal of Biomedical Optics's content profile, based on 25 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.

1
Evaluation of fluorescent proteins for compatibility with STED microscopy systems using two-color spectroscopies

Sato, K.; Okada, D.; Sugizaki, A.; Nakagawa, T.; Kumagai, H.; Iketaki, Y.; Terada, S.

2026-05-15 biophysics 10.64898/2026.05.11.724171 medRxiv
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Stimulated emission depletion (STED) microscopy is a super-resolution fluorescence imaging technique that achieves high spatial and temporal resolution by exploiting stimulated emission to induce fluorescence depletion (FD) and is expected to have substantial utility for imaging applications using fluorescent proteins. However, the compatibility of fluorescent proteins with STED microscopy systems has been understood primarily through empirical observations, and there is no established methodology for the rational selection of fluorescent proteins for STED microscopy. In this study, we systematically evaluated the compatibility of commonly used fluorescent proteins with STED microscopy systems by measuring FD properties using transient absorption spectroscopy and fluorescence dip spectroscopy, both of which are classified as two-color spectroscopy (TCS). Fluorescent proteins identified as compatible with the STED microscopy system based on the TCS measurements were employed for three-dimensional STED imaging of cellular samples expressing each protein. In all samples, three-dimensional spatial resolution was improved relative to confocal laser microscopy, with particularly marked improvements in z-axis resolution. These findings demonstrate that measurements of FD properties via TCS provide a robust approach for evaluating the compatibility of fluorescent proteins with the STED microscopy system and for selecting suitable fluorescent proteins for STED imaging.

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Functional Assessment of Cardiac Beat Dynamics Under Dynamic Flow: Insights from the Mera Microphysiological System

Almeida, N.; Coffey, V. S.; Costello, P.; Madden, C.; Devitt, S.; Mukkunda, S. R.; Keshava, B. B.; Sunil, S.; Riley, L. G.; Deely, S.; de Benedictis, C. A.; Lyons, M.; Cliffe, F.

2026-05-22 bioengineering 10.64898/2026.05.20.726520 medRxiv
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Cardiac rhythm is a critical clinical indicator for cardiac arrhythmias and adverse events during drug toxicity studies. In vivo, cardiomyocyte responses to pharmacological agents occur within minutes and are strongly influenced by dynamic drug delivery through blood flow. However, conventional 2D and 3D static culture systems fail to replicate these fluid flow kinetics, limiting their physiological relevance for assessing beat rate responses. Here, we present Mera, an advanced microphysiological system (MPS) developed by Hooke Bio, designed for high-throughput, long-term culture and functional analysis of 3D cardiac spheroids composed of human induced pluripotent stem cell-derived cardiomyocytes and cardiac fibroblasts. Mera enables dynamic perfusion, allowing investigation of cardiomyocyte beat rates under physiologically relevant flow conditions. The platform supports up to 640 spheroids per run and integrates automated imaging, fluid handling, and user-friendly software, operating under controlled physiological conditions (37{degrees}C, 5% CO2). Flow rates are tunable between 0 and 12.5 mL/min to mimic in vivo environments. Pharmacological testing with verapamil, isoproterenol, calcium chloride, and propranolol demonstrated real-time, reversible modulation of beat rate under flow, including recovery following drug-induced suppression. System variability was comparable to a temperature-controlled reference platform, supporting robust statistical analysis. Dose-response studies yielded IC values consistent with literature, confirming physiological relevance. Collectively, these results demonstrate that Mera provides a reproducible, scalable, and human-relevant platform for cardiac drug testing. By enabling dynamic drug exposure and automated analysis, Mera represents a powerful new approach methodology (NAM) for improving the predictive assessment of cardiac safety and beat-rate modulation drug responses.

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Reflection spectroscopy of bistable visual pigments in living butterflies

Pirih, P.

2026-05-19 biophysics 10.64898/2026.05.15.725499 medRxiv
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Invertebrate vision relies on bistable visual pigments flipping upon photon absorption between rhodopsin and metarhodopsin states. In living butterflies, the UV-VIS absorption spectra of rhodopsin and metarhodopsin, respectively with 11-cis and all-trans isomers of 3-hydroxy-retinal (A3) chromophore, can be conveniently recorded from the eyeshine, the light reflected from the compound eye after passing twice through the light-guiding rhabdoms. * Here, a microscope coupled with a broadband LED source and a microspectrometer was used to record photorelaxations reported in eyeshine reflection spectra. Fitting temporal exponential relaxations to log-reflectance arrays yielded transient and baseline spectra that are analogous to absorbance difference and sum, respectively. Both types of spectra were subjected to singular value decomposition and to fitting of templated visual pigment absorption spectra. * The compound eye of the high brown fritillary Fabriciana adippe was exposed to a series of second-long broadband light pulses, causing photorelaxations with time constants between 40 and 120 ms that led to 80% metarhodopsin in equilibrium. The transient and baseline spectra were fitted with pigment templates, estimating the alpha peak wavelength 547-552 nm for rhodopsin and 496-501 nm for metarhodopsin. The metarhodopsin to rhodopsin alpha peak absorbance ratio 1.25-1.35 is consistent with the isosbestic wavelength at 530 nm. The second isosbestic wavelength indicates that rhodopsin beta (UV) peak absorbs more strongly than metarhodopsin below 405 nm. * Baseline spectra, which were not explicitly analysed in previous studies, enable concatenation of exposures, monitor long-term changes of pigment, and enhance the estimation of beta peak parameters. * The method can be directly used in many butterflies and could be adapted to other insects, particularly fruitflies, facilitating studies of the relation between the visual pigment spectra and the opsin sequences. Spectroscopic results can be complemented with physiologically measured photoreceptor spectral sensitivity datasets and analysed with the same global fitting procedure.

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An Integrated Photoreceptor-to-RGC Stimulation Circuit for Intraocular Visual Prostheses

Bedi, V.; Chaudhry, M. U.

2026-05-19 bioengineering 10.64898/2026.05.15.725457 medRxiv
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Visual prostheses face a critical miniaturisation challenge: converting photoreceptor signals to biologically appropriate retinal ganglion cell (RGC) stimulation patterns within the spatial constraints of intraocular implants. Existing systems rely on external microcontrollers for signal processing, limiting scalability for high-density pixel arrays. This paper presents an integrated per-pixel circuit architecture that directly converts photocurrent into frequency-modulated current pulses that match RGC activation thresholds. The design targets are established through NEURON computational modelling of red-green colour-opponent midget RGCs, identifying stimulation thresholds of +0.1nA to +3.5nA for depolarisation and -0.1nA for repolarisation. The proposed circuit combines a transimpedance amplifier, a voltage-controlled oscillator with a Schmitt trigger, and a current-controlled output stage to generate biphasic pulses within these thresholds. A complementary output provides lateral inhibition, reducing crosstalk between adjacent RGC stimulation sites. Photoreceptor integration is achieved using P3HT:PCBM organic photodiodes for cone-associated RGCs and phototransistors for rod-associated RGCs, validated through OghmaNano finite element simulations. The photodiode circuit produces output frequencies of 2.5Hz (dark) to 600Hz (100 W/m2), matching reported RGC response ranges. This architecture eliminates external processing requirements, enabling scalable high-density retinal prostheses design.

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Dimensionally traceable 3D microstructures for multimodal microscope calibration

Jiang, J.; Jones, C.; Reid, B.; Tsikritsis, D.; Mingard, K.; Ghai, P.; Kurttila, M.; Shaw, M. J.

2026-05-11 bioengineering 10.64898/2026.05.07.722194 medRxiv
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High-resolution microscopy techniques are used across research and industry to analyse biological systems, from biomolecules to subcellular organelles, multicellular models and tissues. As multimodal imaging workflows and quantitative analysis of bioimaging data become increasingly widespread, there is a growing need for materials and methods to calibrate imaging systems and evaluate the fidelity of generated image data. Here, we present three-dimensional microscopy phantoms fabricated using two-photon photolithography from transparent resins that exhibit both broadband visible autofluorescence and Raman scattering across the fingerprint and C-H stretching regions. Suitable for analysis using optical profilometry, the phantoms were dimensionally calibrated with SI traceability using a metrological confocal microscope. Immersible in air and common aqueous imaging media, the phantoms are compatible with a wide variety of optical microscopy techniques, including one and two-photon excited fluorescence and coherent Raman scattering microscopy. We employed a forked wedge design to validate image deconvolution results and a stacked lattice phantom to recover image distortion matrices under realistic biological imaging conditions. We demonstrate the impact of correcting chromatic offsets and axial scaling errors for a representative application: analysis of a cell seeded scaffold using confocal laser scanning fluorescence microscopy. These phantoms provide a versatile platform for calibration, quality control and validation of multimodal imaging pipelines and improved quantitative optical microscopy.

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Vascular tree structure-based perfusion phantom fabrication using modified Hele-Shaw Cell technique

Das, S.; Rakshe, M.; Sarkar, S.; Paul, R.; Marathe, S. D.; Abraham, N. M.; Gandhi, P. S.; Varma, H. M.

2026-05-03 bioengineering 10.64898/2026.04.29.721575 medRxiv
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Tissue phantoms that mimic microvasculature and perfusion are essential for modelling vascular function, guiding interventions, and calibrating imaging systems, which require faithful replication of vascular geometry and flow. Conventional fabrication strategies, including wire-based molding, lithographic micromachining, and additive manufacturing, offer useful capabilities but remain constrained by predefined designs, rectangular channel cross-sections, limited scalability, and high production costs. Reliance on predefined digital vascular models restricts design flexibility and limits the ability to capture the natural variability and complexity of real vascular systems. Here, we present a lithography-free, fractal-generating approach based on a modified Lifted Hele-Shaw Cell (LHSC) technique, in which vascular networks emerge spontaneously via interfacial fluid instabilities. Unlike pre-designed methods, these structures are governed by fluid properties and flow conditions, enabling adaptive, physiologically relevant geometries with smooth Gaussian cross-sections and natural diameter tapering. We demonstrate four phantom designs: a planar vascular tree, an anatomically guided cerebral network, a retinal vascular model, and a conformable curved substrate phantom. Validation using Laser Speckle Contrast Imaging confirms structural fidelity and physiologically relevant flow consistent with Murrays law. This platform uniquely integrates realistic vascular architecture with emergent, fractal driven formation, highlighting its potential as a reproducible and biologically relevant alternative to conventional vascular phantom fabrication. Furthermore, the availability of such realistic in vitro vascular models can reduce reliance on animal experiments and contribute towards more ethical and sustainable preclinical research.

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Expansion microscopy reveals insulin granule clustering in human β-cells in type 2 diabetes

Pugliese, L.; De Lorenzi, V.; Ferri, G.; Vo, H.; Lindquist, A.; Tesi, M.; De Luca, C.; Suleiman, M.; Marselli, L.; Zhao, Y.; Marchetti, P.; Beltram, F.; Cardarelli, F.

2026-05-08 biophysics 10.64898/2026.05.05.722840 medRxiv
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Aims/hypothesisQuantitative nanoscale analysis of insulin secretory granules (ISGs) in human pancreatic tissue has been limited by the lack of imaging methods that combine high resolution with large-scale sampling. We aimed to establish expansion microscopy (ExM) as a platform for in situ, quantitative analysis of ISG organisation in human {beta}-cells and to assess whether type 2 diabetes (T2D) is associated with alterations in granule size, abundance or spatial organisation. MethodsWe applied Magnify ExM to PFA-fixed, paraffin-embedded pancreatic tissue sections from 6 human donors, 3 non-diabetic (ND) and 3 T2D, enabling super-resolution optical imaging of insulin-labelled granules. Insulin-positive structures were segmented and analysed using a morphometric pipeline to quantitatively assess size, shape and spatial features. Granule clustering was quantified based on combined area and roundness criteria. ResultsThe diameter distribution of highly circular granules was similar between ND and T2D samples and estimates of granule number per cell indicated only a modest reduction in T2D ([~]25%). In contrast, mapping insulin-positive structures in a roundness-area space revealed a marked enrichment of large, irregular objects consistent with granule clustering in T2D. The fraction of clustered granules was significantly increased in T2D and strongly inversely correlated with insulin stimulation index (r = -0.85). Conclusions/interpretationThese results establish expansion microscopy as a powerful platform for quantitative nanoscale analysis of human pancreatic tissue and identify altered spatial organisation of insulin granules, rather than marked granule depletion, as a prominent feature associated with {beta}-cell dysfunction in T2D. Research in contextO_ST_ABSWhat is already known about this subject?C_ST_ABSO_LI{beta}-cell dysfunction in type 2 diabetes is often attributed to reduced insulin content or {beta}-cell loss. C_LIO_LIInsulin secretory granules (ISGs) have been characterised ultrastructurally, but quantitative analysis in human tissue remains limited. C_LIO_LISuper-resolution approaches, including expansion microscopy, are emerging tools for nanoscale imaging in biological tissues. C_LI What is the key question?O_LIIs {beta}-cell dysfunction in type 2 diabetes associated with depletion of insulin granules or with altered spatial organisation? C_LI What are the new findings?O_LIInsulin granule size distribution is largely preserved in type 2 diabetes, with only a modest reduction in granule number per cell. C_LIO_LIA significant increase in insulin granule clustering is observed in diabetic {beta}-cells. C_LIO_LIGranule clustering is strongly inversely correlated with insulin secretion in the same donor tissues. C_LI How might this impact on clinical practice in the foreseeable future?O_LIIdentifying altered granule organisation as a feature of {beta}-cell dysfunction may help refine the understanding of disease mechanisms and guide future strategies targeting {beta}-cell function. C_LI

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Impact of Imaging Protocols on Thermal Detection of Pressure Injuries: Threshold versus Deep Learning Across Skin Tones

Asare-Baiden, M.; Sonenblum, S. E.; Jordan, K.; Tomi John, G.; Chung, A.; Gichoya, J. W.; Hertzberg, V. S.; Ho, J. C.

2026-05-24 medical ethics 10.64898/2026.05.21.26353842 medRxiv
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Pressure injuries represent a significant healthcare challenge requiring early detection to prevent severe complications. While thermal imaging shows promise for detecting early pressure-related temperature changes, its robustness across varying imaging conditions and diverse patient populations remains unclear. This study systematically evaluated how imaging protocol variations (lighting, distance, positioning, camera type) and participant skin tone influence classification model performance for thermal cooling detection. Using a controlled cooling protocol to simulate early pressure injury temperature changes, we collected 1,680 images from 35 diverse participants across 12 imaging protocol variations. We compared two approaches: three deep learning models (MobileNetV2, InceptionNetV3, ResNet50) and a threshold-based approach using an optimal fixed threshold temperature differential. Deep learning models outperformed the threshold-based approach, achieving 98.6-99.6% accuracy compared to 95.6%, with superior performance across all imaging protocols and skin tone groups. Threshold-based approach showed camera-dependent misclassification patterns across skin tones. On the high-resolution FLIR E8XT, the MST 7-10 group had 8 of 11 misclassifications. This pattern shifted on the low-resolution FLIR ONE Pro, where the intermediate skin tone group (MST 6) had 22 of 44 total misclassifications.In contrast, deep learning models maintained consistent performance across all skin tone groups and imaging protocols. Visualization analysis of the deep learning models suggested that these models focused on thermal gradients at cooling region boundaries, suggesting that spatial temperature gradients, not single-value thresholds, are critical for accurate detection. These findings suggest the potential of deep learning-based approaches to maintain robust, equitable performance across diverse skin tones and imaging conditions.

9
Frequency-Dependent Bioimpedance Signatures of Ocular Tissues in Intact Ex Vivo Eyes Under Simulated Surgical Conditions

Behziz, B.; Nepo, M.; Mousavimotlagh, Y. S.; Tsao, T.-C.; Barzelay Wollman, A.

2026-05-18 bioengineering 10.64898/2026.05.14.725195 medRxiv
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PurposeTo characterize the frequency-dependent bioimpedance properties of major ocular tissues in intact ex vivo porcine eyes under simulated surgical conditions and evaluate tissue separability at discrete frequencies. MethodsBioimpedance spectra were acquired from sclera, corneal epithelium, iris, lens, vitreous, and retina in intact ex vivo porcine eyes using a two-electrode probe and a precision LCR meter over 5 kHz to 1 MHz. Measurements were obtained under balanced salt solution and ophthalmic viscosurgical device conditions. Probe-tissue contact was verified by microscope visualization and optical coherence tomography. Tissue separability at 5, 50, 100, and 900 kHz was evaluated using global and pairwise statistical comparisons, effect sizes, and ROC-based separability metrics. Robotic-stabilized and handheld measurements were also compared. ResultsOcular tissues demonstrated distinct, frequency-dependent impedance magnitude distributions. Across sampled frequencies, 60% to 80% of tissue pairs showed significant differences after multiplicity correction. Median pairwise effect sizes ranged from Cohens d = 0.48 at 5 kHz to 1.04 to 1.06 at 50 to 100 kHz. Median ROC-based separability was 0.91 at 5 kHz and 0.76 to 0.77 at 50 to 900 kHz. Robotic-stabilized measurements showed lower variance than handheld measurements, although tissue-specific impedance ranges and frequency-dependent trends were preserved across acquisition modes. ConclusionsMajor ocular tissues exhibit reproducible, frequency-dependent bioimpedance signatures in intact ex vivo eyes under simulated surgical preparation. These findings establish a physiologically relevant ocular impedance reference dataset and support bioimpedance as a complementary modality for tissue differentiation in ophthalmic microsurgery.

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Assessing Lipid Core Burden Index with Depolarization-Sensitive Optical Frequency Domain Imaging

Jones, G.; Otsuka, K.; Fujisawa, N.; Yamaura, H.; Matsumoto, K.; Okamoto, A.; Yamaguchi, T.; Shimada, T.; Kagawa, S.; Yamazaki, T.; Akasaka, T.; Bouma, B. E.; Villiger, M.; Fukuda, D.

2026-06-01 cardiovascular medicine 10.64898/2026.05.22.26353889 medRxiv
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Background: Quantitative lipid assessment is central to identifying rupture-prone coronary plaques and represents a therapeutic target for lipid-lowering therapy. Near-infrared spectroscopy (NIRS)-derived lipid core burden index (LCBI) is well validated and widely used for detecting lipid-rich lesions. Optical frequency domain imaging (OFDI) is increasingly adopted for guiding percutaneous coronary intervention (PCI) due to its high-resolution structural imaging capabilities. Depolarization-sensitive OFDI (depOFDI) provides intrinsic lipid contrast and may enable combined structural and compositional plaque characterization within a single OFDI-based platform. Objective: To define an OFDI-derived lipid metric and evaluate its agreement with NIRS-derived LCBI. Methods: Thirty-three patients underwent both polarization-sensitive OFDI and NIRS-intravascular ultrasound imaging during PCI. After exclusion of 4 datasets, 29 co-registered pullbacks were analyzed. A signal-to-noise-corrected depolarization metric was used to identify lipid-rich regions and generate depOFDI chemograms. maxLCBI4mm value and location, as well as total LCBI, were computed and compared with NIRS. Results: depOFDI demonstrated strong agreement with NIRS, showing high correlation for maxLCBI4mm (r^2 = 0.862) and total LCBI (r^2 = 0.867), along with strong spatial concordance for the location of the maxLCBI4mm (r^2 = 0.900). Bland-Altman analysis of LCBI4mm showed minimal bias (10.7) with 95% limits of agreement of [81.4 to 102.8]. Conclusions: depOFDI enables accurate quantification of lipid burden alongside the high-resolution structural information inherently provided by OFDI. Because depolarization metrics can be derived from polarization-diverse detection available in many commercial OFDI systems, this approach provides a practical pathway toward comprehensive plaque characterization within existing PCI workflows, without the need for additional imaging modalities.

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Online characterization of surrogate metrics for metabolic phenotype in human induced pluripotent stem cell bioprocessing

Colter, J.; Kallos, M.; Murari, K.

2026-05-12 bioengineering 10.64898/2026.05.08.723750 medRxiv
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Human induced pluripotent stem cells (hiPSCs) are the most accessible source material for derivation of stem-cell-based therapies at scale. However, a disconnect exists between quality characteristics of phenotype in the pluripotent state, and downstream metrics for efficacy and safety. Bridging this gap is a major challenge. Given hiPSC plasticity, environmental conditioning plays a crucial role in guiding phenotype. This work presents a parallelizable scale-down approach, acquiring real-time data to inform hiPSC phenotype throughout biomanufacturing. We developed an optoelectronic instrumentation suite capable of measuring pH, dissolved oxygen, and cell density as important surrogates for phenotype in a scale-down expansion bioprocess. We were successful in obtaining continuous, integrated parametric data throughout cultivation and estimating metabolic characteristics of hiPSC phenotype. This system functions as a proof-of-concept tool for development of predictive models and monitoring strategies around the elucidation of phenotypic dynamics within hiPSC biomanufacturing. We have demonstrated a feasible open-source multivariate continuous monitoring approach at research scale that combines common process parameters with a scattering measurement against aggregate density. The combination of these parameters enables surrogate measurement of a metric for metabolic phenotype. This contribution emphasizes monitoring how the bioprocess influences variables important in the context of cell state, in broader pursuit of better understanding the link to downstream functionality and global optima in hiPSC biomanufacturing for regenerative medicine.

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A Spectrum of Possibilities: A Systematic Evaluation of Fluorescent Proteins in Cyanobacteria

Hasenklever, D.; Boecker, J.; Grankin, A.; Sener, F.; Axmann, I. M.; Behle, A.

2026-05-19 synthetic biology 10.64898/2026.05.18.725961 medRxiv
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Fluorescent reporters cover a wide range of applications in both basic and applied research. Whether a study involves microscopic imaging to study (co)-localization of proteins, FRET, biosensing, or quantifying gene expression, fluorophores are attractive reporter candidates due to their relatively straightforward in vivo readout. For microbiological applications, a wide variety of fluorescent proteins with varying excitation and emission wavelengths, brightness levels, and maturation times are available. Careful consideration is required when selecting from this large suite of proteins, especially when choosing multiple fluorophores. This is further complicated in phototrophic organisms, which exhibit strong autofluorescence, especially towards the red part of the spectrum, effectively eliminating common candidates such as mCherry. In this study, the specific properties and performance of a selection of fluorescent proteins are systematically evaluated against the background of photosynthetic pigment-derived autofluorescence in the cyanobacterium Synechocystis sp. PCC 6803. Specific readouts of different combinations of fluorescent proteins are also analyzed using high-throughput methods, namely plate reader fluorescent scans and single-cell flow cytometry to quantify fluorescence. The ultimate goal is to assess each fluorescent protein with regard to: 1.) Its ability to be discerned from cyanobacterial autofluorescence. 2.) Its compatibility with other fluorophores in this context. 3.) Its overall suitability in cyanobacterial research. Several highly suitable fluorescent proteins for use in cyanobacteria are identified, including mTagBFP2, mNeonGreen and mScarlet-I and suitable combinations, covering nearly the whole spectrum of visible light. This study expands the knowledge and toolset for current and future researchers and uncovers a whole spectrum of possibilities for fluorescent protein selection in cyanobacterial cell biology.

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An analysis of retinal safety when using a laser based low-level red light therapy device for myopia

Schulmeister, K.; Marshall, J.

2026-05-07 ophthalmology 10.64898/2026.05.05.26352503 medRxiv
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PurposeTo evaluate the retinal safety of repeated low-level red-light (RLRL) therapy using the Eyerising Myopia Management Device (EMMD) by analysing exposure parameters relative to established thermal and photochemical retinal injury thresholds and empirical human exposure data. MethodsEmission characteristics of the EMMD were measured in an accredited laboratory under worst-case conditions. Parameters assessed included wavelength, intraocular power, corneal irradiance, and retinal image characteristics across accommodative states. These measurements were compared with international safety standards, maximum permissible exposure limits, and experimentally derived retinal injury thresholds from animal studies and validated computational models. The effects of repeated exposures from RLRL therapy using the EMMD were evaluated using photochemical additivity principles and repair kinetics, and further contextualised using human volunteer exposure data. ResultsThe EMMD emitted red laser radiation at 654-655 nm with a maximum intraocular power of approximately 1 mW through a 7 mm pupil, placing it within Class 3R and marginally above the Class 2 limit. Corneal irradiance was approximately 26 W m- 2, well below conservative photochemical exposure limits. Thermal injury modelling indicated retinal damage thresholds above device exposure, including under worst-case assumptions of minimal retinal image size and absence of eye movements. Accounting for repeated daily exposures and photochemical additivity, safety margins remained approximately 3-fold for a 7 mm pupil and approximately 8-fold for a more realistic 4 mm pupil. Human volunteer studies demonstrated no detectable structural or functional retinal injury at exposure levels approximately five times higher than those produced by the EMMD. ConclusionExposure parameters of RLRL therapy using the EMMD remain well below conservative retinal injury thresholds under prescribed use conditions. Integration of experimental, modelling, and human data indicates substantial safety margins, supporting its safe clinical use.

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Optimisation of OptoDrum protocol for measuring optomotor response in juvenile & adult zebrafish

Super, R.; Bui, B. V.; Xie, J.; Bou-Antoun, P.; Scholz, L.; Jusuf, P. R.

2026-05-21 neuroscience 10.64898/2026.05.20.720959 medRxiv
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Zebrafish (Danio rerio) are an important vertebrate model for vision and neuroscience research. In the larval stages, the aquatic species begins to elicit the optomotor response (OMR) to stabilize themselves in water -- a behaviour that may be exploited in the laboratory to measure visual acuity. However, up to now, the measurement of the OMR in juvenile and adult zebrafish has been limited due to their behavioural complexity. Here, we optimize a protocol to assay zebrafish aged between 4 and 9 weeks-post-fertilization, by displaying sinusoidal gratings parallel to the zebrafish eye to elicit a robust OMR. We assessed the visual spatial-frequency tuning function of an environmentally induced myopia model to confirm the sensitivity and robustness of the protocol. Additionally, we show the OMR is sensitive to the contrast and temporal resolution of the sinusoidal gratings. Furthermore, we found that the time between stimulus presentations impact the spatial-frequency tuning function likely as time is required for zebrafish to return to baseline swimming after eliciting the OMR. Finally, we found that the OMR after ten versus twenty seconds of stimulus onset appears comparable; indicating that robust OMR responses in zebrafish can be elicited through relatively short stimulus presentations. Through the experiments conducted, we present an optimized protocol specific to zebrafish. The protocol may be used to follow the progression or treatment efficacy of progressive neurological disorders including specific visual disorders and higher brain functions with visual endophenotypes. Ultimately, this protocol allows for high-throughput robust measures of visual and neural function in zebrafish.

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3D Printed Customizable Radiopaque Markers for Assessing Gastrointestinal Transit

Zhang, Y.; Phowarasoontorn, P.; Boitet, M.; Dabbour, A.-H.; Naser, H. T.; Khlaifat, B.; Ramadi, K.

2026-05-21 bioengineering 10.64898/2026.05.19.726145 medRxiv
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Tracking gastrointestinal (GI) transit in preclinical models is essential for assessing gut motility and drug delivery. Current preclinical methods rely on end-to-end transit measurements or emptying studies that require terminal endpoints and organ explanation. Clinically, radiopaque "Sitz" markers are administered orally and their position in the GI tract is assessed through radiography. Sitz markers have been in use since 1969 and are typically mass-produced using industrial molding or extrusion, resulting in a single, fixed geometry with limited tunability. We present a stereolithography (SLA)-based method to fabricate customizable radiopaque markers using additive manufacturing with a barium sulfate (BaSO4)-doped resin. We demonstrate precise control over marker geometry, a key advantage over existing markers. Furthermore, we apply this method in vivo, tracking markers in a live rat model from ingestion to excretion using serial CT imaging. We systematically investigate how changes in marker geometry impact GI residency and transit time. Our results show that 3D printed markers provide a flexible and tunable platform for radiopaque marker fabrication and enable investigation of the fundamental relationship between a markers physical properties and its performance in a dynamic biological environment. This work establishes a novel, tunable platform for GI motility evaluation and drug delivery studies.

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Multi-site temporal control of optogenetic stimulation enhances firing frequencies in peripheral nerves

Welton, T. A.; Currie, T.; Fontaine, A.; Caldwell, J.; Weir, R. F.; Restrepo, D.; Gibson, E. A.

2026-05-19 neuroscience 10.64898/2026.05.15.724667 medRxiv
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We find that multi-site temporal control of optogenetic photostimulation in peripheral nerves can enhance firing rates by overcoming the intrinsic limitation of opsin photophysics. The benefits of multi-site optogenetic stimulation were demonstrated with three approaches: (1) in silico modeling, (2) ex vivo in the sciatic nerve, and (3) in vivo in the vagus nerve. An in silico model of multi-site optogenetic stimulation was developed in two Hodgkin and Huxley type neuron models, that supported our hypothesis. The ex vivo sciatic nerve showed an increase in firing frequency that is physiologically relevant for functional control. The technique was then applied in vivo for optogenetic vagus nerve stimulation resulting in significant changes in heart rate compared with standard methods of single-site stimulation. Improving the control of optogenetically induced neural firing will have broad impacts for future developments in optical nerve interfaces and brain-machine interfaces.

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Electroporation-mediated delivery of protein biosensors for metabolic imaging in differentiated myotubes

Kawamura, A.; Vu, C. Q.; Shimizu, N.; Shibaguchi, T.; Masuda, K.; Arai, S.

2026-05-15 bioengineering 10.64898/2026.05.11.722572 medRxiv
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Understanding skeletal muscle metabolism involves real-time monitoring of key cellular parameters, such as calcium ions (Ca2+), adenosine triphosphate (ATP), cyclic adenosine monophosphate (cAMP), and intracellular temperature. Fluorescent protein (FP)-based biosensors are used for live-cell imaging of these signals with high spatiotemporal resolution. Differentiated myotubes are in vitro models used for physiological muscle metabolism research. However, efficient transfection of FP-based biosensors into these cells is challenging. Here, we developed an electroporation-based strategy for delivering recombinant protein biosensors into fully differentiated myotubes. Biosensors for Ca2+, ATP, cAMP, and temperature were recombinantly produced using Escherichia coli and introduced into myotubes using electroporation. Electroporation conditions were optimised to maximise delivery efficiency, preserve cell viability, and minimise cellular damage. We established a robust intracellular delivery system that effectively demonstrated Ca2+, ATP, and temperature dynamics. Furthermore, we achieved the successful co-delivery of two biosensors that enabled dual imaging of Ca2+ and cAMP in response to stimulation.

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A Prospective Observational Study on a Multimodal Non-Invasive Physiological Monitoring System (Hayl): Feasibility, Signal Characterization, and Exploratory Biomarker Correlation

Choda, G.; Choda, A.

2026-05-17 endocrinology 10.64898/2026.05.13.26353115 medRxiv
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Chronic conditions such as Type 2 Diabetes Mellitus (T2DM) and Hypertension (HTN) remain underdiagnosed in community settings, particularly in resource-limited populations. Conventional diagnostic approaches rely on episodic measurements and laboratory-based assessments, limiting scalability for large-scale screening. Non-invasive physiological monitoring systems offer a potential pathway for accessible and rapid wellness assessment in real-world environments. This study aimed to evaluate the feasibility, signal acquisition performance, and exploratory physiological signal characteristics of a non-invasive multimodal monitoring system (Hayl) in community-based screening settings. Methods: A prospective, cross-sectional, multicenter observational pilot study was conducted across rural and urban screening camps in south India. A total of 281 adult participants were enrolled, including individuals with known T2DM, HTN, and those without known comorbidities, encompassing both symptomatic and asymptomatic subjects. Physiological data were acquired using the Hayl system, which integrates photoplethysmography (PPG) and temperature sensing. Signal acquisition feasibility, waveform quality, and derived signal characteristics were evaluated. Comparative and exploratory analyses were performed across predefined clinical subgroups. The study was conducted under Institutional Ethics Committee approval in accordance with guidelines from the Indian Council of Medical Research. Conclusion: The Hayl system demonstrated high feasibility for physiological signal acquisition, with successful PPG recordings in 274 participants (97.5%) and temperature signals in 279 participants (99.3%). Most recordings exhibited high waveform quality (74.0%), with observable variations in signal characteristics across clinically relevant subgroups. Reduced pulse variability and increased waveform irregularity were more frequently observed in participants with T2DM and HTN, while symptomatic individuals demonstrated greater signal variability compared to asymptomatic participants. Temperature measurements were stable, with a mean peripheral temperature of 33.4 with a variation of 1.2C degrees. These findings support the potential of Hayl as a non-invasive multimodal platform for community-based wellness screening and exploratory signal-based physiological assessment. Further large-scale and longitudinal studies are required to establish clinical utility.

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Effects of oxycodone versus sufentanil on postoperative sleep quality and analgesia in patients after modified radical mastectomy: study protocol for a randomized, double-blind, controlled trial using wearable sleep monitoring

deng, q.; Hu, J.; Huang, L.; Zheng, J.; Zheng, L.; Wu, A.

2026-05-22 anesthesia 10.64898/2026.05.20.26353683 medRxiv
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Background Postoperative sleep disorder, a frequently observed complication, is associated with heightened pain sensitivity, exacerbated inflammatory reactions, and compromised tissue repair. Sufentanil, a highly selective -opioid receptor agonist, is widely used in patient-controlled intravenous analgesia (PCIA) and has been associated with reduced sleep efficiency. Oxycodone, as a /{kappa} dual receptor agonist, has shown a lower incidence of adverse effects in clinical practice. Despite these pharmacological differences, the comparative effects of oxycodone- versus sufentanil-based PCIA on postoperative sleep remain poorly characterized. Recent advances in wearable devices demonstrate strong agreement with polysomnography (PSG) in intergroup comparisons of sleep efficiency and total sleep time, enabling continuous, non-invasive, multi-night sleep monitoring and offering a viable alternative for clinical postoperative sleep research. Hence, we design this clinical trial to compare postoperative sleep efficiency between patients receiving oxycodone-based versus sufentanil-based PCIA under wearable sleep monitoring. Methods This study is a randomized, double-blind, placebo-controlled trial that was conducted at a single center. A sample size of 68 patients was determined through calculation, and these patients will be randomly assigned to either the oxycodone group or the sufentanil group. Sleep monitoring was initiated using a wristband device one day before surgery after recruitment. The sleep quality data at different setting time will be monitored. All patients will be followed up by blinded evaluators at baseline and 1, 2, and 30 days after the intervention. The follow-up included pain scores, postoperative complications and adverse events, etc. Discussion By integrating a modern photoelectric device with first-line analgesics, we hope the result of the study will inform perioperative sleep management, guide clinical analgesic selection, and improve patient recovery quality.

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SIGNAL: A Scalable, Real-World Model for Rapid Intraoperative Molecular Classification of Gliomas Using Stimulated Raman Histology

Goff, N. K.; Markert, J. E.; Reinecke, D.; Springer, A.; Chen, A. M.; Park, M.; Malte, G.; Scotford-Broemmer, K.; Hoonsbeen, S.; Eddy, K.; Chowdury, A.; Jiang, C.; Kondepudi, A.; Meissner, A.-K.; Fürtjes, G.; Müller, N.; Neuschmelting, V.; Pekmezci, M.; Young, J.; Freudinger, C.; Snuderl, M.; Berger, M.; Hervey-Jumper, S.; Golfinos, J. G.; Hollon, T.; Orringer, D. A.

2026-05-13 oncology 10.64898/2026.05.11.26350247 medRxiv
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BackgroundPrevious machine learning models to intraoperatively predict the molecular status of gliomas using stimulated Raman histology (SRH), such as DeepGlioma, have achieved high performance (91.5% accuracy) on curated datasets. However, when used intraoperatively, DeepGlioma (162M parameters) runs slowly on current SRH hardware and underperforms due to its lack of an image rejection mechanism and its validation on curated images. Here, we introduce SRH-Informed Glioma classificatioN with Attention Learning (SIGNAL) (27M parameters), a lighter model with a built-in attention-based rejection mechanism that outperforms DeepGlioma on uncurated clinical datasets. MethodsSIGNAL was developed using 1.56 million SRH fields-of-view from 967 adult diffuse glioma patients collected between December 2017 and July 2025. We used 412 patients from NYU for training and internal validation and a multi-institutional, international cohort of 555 patients for testing. SIGNAL uses a ResNet50 backbone pretrained using a hierarchical contrastive loss function followed by a multi-head multi-layer perceptron (MLP). Using a patch-based attention threshold of 0.6, a final MLP was trained to predict glioma subtypes: glioblastoma, oligodendroglioma, or astrocytoma. ResultsSIGNAL outperformed DeepGlioma, achieving greater overall accuracy (90.10% vs. 72.59%) while running faster (16.0 vs. 6.7 patches/s). SIGNAL also outperformed DeepGlioma on all three molecular classification tasks, including IDH mutation (accuracy: 93.51% vs. 79.22%), 1p19q codeletion (93.51% vs. 88.31%), and ATRX loss (89.61% vs. 83.98%). SIGNALs attention mechanism had a strong positive linear correlation with mean patch cellularity (r=0.96, p<0.001) and a strong negative correlation with patch blood coverage (r=-0.99,p<0.001). Finally, subtype and molecular accuracy between tumor core and margin samples were equivalent despite significantly lower patch retention in tumor margins (44.5% vs 60.2%, p<0.0001). ConclusionSIGNAL is a lightweight model for intraoperative molecular classification of gliomas using SRH imaging. Its attention-based image quality filter allows for excellent performance, quick processing, and highly interpretable outputs critical for reliable use in intraoperative workflows. Brief 1-2 Sentence DescriptionWe present SIGNAL, a lightweight machine learning model for intraoperative molecular classification of diffuse gliomas using stimulated Raman histology, whose core innovation is a learned attention mechanism that filters diagnostically uninformative tissue, such as blood and acellular regions, before classification, enabling robust real-world generalizability. Validated on 555 patients across four international centers, SIGNAL outperforms the previous state-of-the-art model DeepGlioma on glioma subtype classification (90.10% vs. 72.59% accuracy) while running 2.4 times faster on intraoperative hardware.